SNP Profiles matching CRU 111

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	AC	GT	CT	GG	AC	CC	AG	CC	AG	GG	CC	AA
1._RUQ_1585	TT	AA	AC	GT	CT	GG	AC	CC	AG	CC	AG	GG	CC	AA
2._ICS_8	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	_	AA
3._ICS_8	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	_	AA
4._ICS_8	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	_	AA
5._ICS_8	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	_	AA
6._ICS_8	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	_	AA
7._ICS_8	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	_	AA
8._NA_95	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	_	AA
9._NA_95	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	_	AA
10._ICS_8	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	_	AA
11._ICS_8	_	_	AC	GT	CT	_	AC	CC	AG	CC	_	_	_	AA
12._ICS_8	_	_	AC	GT	CT	_	AC	_	AG	CC	_	_	_	AA
13._PA_81_[PER]	_	_	AC	GT	CT	_	AC	-	AG	CC	_	_	_	AA
14._GC-08-054-1-65	TT	AA	AC	GT	CT	GG	AC	CC	AG	CC	AG	GG	CC	AA
15._GC-08-054-1-65	TT	AA	AC	GT	CT	GG	AC	CC	AG	CC	AG	GG	CC	AA
16._GC-08-054-1-65	TT	AA	AC	GT	CT	GG	AC	CC	AG	CC	AG	GG	CC	AA
17._GC-08-054-1-65	TT	AA	AC	GT	CT	GG	AC	CC	AG	CC	AG	GG	CC	AA
18._GC-08-054-1-65	TT	AA	AC	GT	CT	GG	AC	CC	AG	CC	AG	GG	CC	AA
19._GC-01-122-6-19	TT	AA	AC	GT	CT	GG	AC	CC	AG	CC	AG	GG	CC	AA
20._GC-08-168-4-11	TT	AA	AC	GT	CT	GG	AC	CC	AG	CC	AG	GG	CC	AA
21._GC-08-054-1-65	TT	AA	AC	GT	CT	GG	AC	CC	AG	CC	AG	GG	CC	AA
22._GC-08-054-1-65	TT	AA	AC	GT	CT	_	AC	CC	AG	CC	AG	GG	CC	AA
23._GC-08-054-1-65	TT	AA	AC	GT	CT	GG	AC	CC	AG	CC	AG	GG	CC	AA
24._GU_144_/C	_	_	AC	GT	_	_	AC	CC	AA	CC	_	_	_	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	TT	TT	CC	CC	TT	TT	TT	GG	GG	GT	AA	GG	CG
1._RUQ_1585	CC	TT	TT	CC	CC	TT	TT	TT	GG	GG	GT	AA	GG	CG
2._ICS_8	CC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG	_
3._ICS_8	CC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG	_
4._ICS_8	CC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG	_
5._ICS_8	CC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG	_
6._ICS_8	CC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG	_
7._ICS_8	CC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG	_
8._NA_95	CC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG	_
9._NA_95	CC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG	_
10._ICS_8	CC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG	_
11._ICS_8	CC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG	_
12._ICS_8	AC	TT	TT	CC	CC	_	TT	_	GG	_	_	_	GG	_
13._PA_81_[PER]	CC	TT	TT	CC	CC	_	TT	_	-	_	_	_	GG	CC
14._GC-08-054-1-65	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	GT	AA	GG	CG
15._GC-08-054-1-65	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	GT	AA	GG	CG
16._GC-08-054-1-65	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	GT	AA	GG	CG
17._GC-08-054-1-65	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	GT	AA	GG	CG
18._GC-08-054-1-65	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	GT	AA	GG	CG
19._GC-01-122-6-19	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	GT	AA	GG	CG
20._GC-08-168-4-11	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	GT	AA	GG	CG
21._GC-08-054-1-65	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	GT	AA	GG	CG
22._GC-08-054-1-65	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	GT	AA	GG	CG
23._GC-08-054-1-65	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	GT	AA	GG	CG
24._GU_144_/C	CC	TT	TT	CC	AC	_	TT	_	GG	_	_	_	GG	_

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	GG	TT	CT	TT	AG	AA	TT	CT	TT	CC	GG	AA	X_X
1._RUQ_1585	CC	GG	TT	CT	TT	AG	AA	TT	CT	TT	CC	GG	AA	X_X
2._ICS_8	CC	GG	_	CT	_	_	_	TT	_	_	CC	GG	AA	X_X
3._ICS_8	CC	GG	_	CT	_	_	_	TT	_	_	CC	GG	AA	X_X
4._ICS_8	CC	GG	_	CT	_	_	_	TT	_	_	CC	GG	AA	X_X
5._ICS_8	CC	GG	_	CT	_	_	_	TT	_	_	CC	GG	AA	X_X
6._ICS_8	CC	GG	_	CT	_	_	_	TT	_	_	CC	GG	AA	X_X
7._ICS_8	CC	GG	_	CT	_	_	_	TT	_	_	CC	GG	AA	X_X
8._NA_95	CC	GG	_	CT	_	_	_	TT	_	_	CC	GG	AA	X_X
9._NA_95	CC	GG	_	CT	_	_	_	TT	_	_	CC	GG	AA	X_X
10._ICS_8	CC	GG	_	_	_	_	_	TT	_	_	CC	GG	AA	X_X
11._ICS_8	_	GG	_	CT	_	_	_	TT	_	_	CC	GG	AA	X_X
12._ICS_8	CC	GG	_	CT	_	_	_	TT	_	_	CC	GG	AA	X_X
13._PA_81_[PER]	CC	GG	_	CT	_	_	_	TT	_	_	CC	GG	AA	X_X
14._GC-08-054-1-65	CC	GG	TT	CT	TT	AG	AA	TT	TT	TT	CC	GG	AA	X_X
15._GC-08-054-1-65	CC	GG	TT	CT	TT	AG	AA	TT	TT	TT	CC	GG	AA	X_X
16._GC-08-054-1-65	CC	GG	TT	CT	TT	AG	AA	TT	TT	TT	CC	GG	AA	X_X
17._GC-08-054-1-65	CC	GG	TT	CT	TT	AG	AA	TT	TT	TT	CC	GG	AA	X_X
18._GC-08-054-1-65	CC	GG	TT	CT	TT	AG	AA	TT	TT	TT	CC	GG	AA	X_X
19._GC-01-122-6-19	CC	GG	TT	CT	TT	AG	AA	TT	TT	TT	CC	GG	AA	X_X
20._GC-08-168-4-11	CC	GG	TT	CT	TT	AG	AA	TT	TT	TT	CC	GG	AA	X_X
21._GC-08-054-1-65	CC	GG	TT	_	TT	AG	AA	TT	TT	TT	CC	GG	AA	X_X
22._GC-08-054-1-65	CC	GG	TT	CT	TT	AG	AA	TT	TT	TT	CC	GG	AA	X_X
23._GC-08-054-1-65	_	GG	TT	CT	TT	AG	AA	TT	TT	TT	CC	GG	AA	X_X
24._GU_144_/C	CC	GG	_	CC	_	_	_	TT	_	_	CC	GG	AA	X_X

Input profile: CRU_111 RUQ_1460

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._CRU_104 RUQ_1585

identical
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._ICS_8

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 3 > FP

Dapeng Zhang, 2016

3._ICS_8

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 2 > FP

Dapeng Zhang, 2016

4._ICS_8

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 9

Dapeng Zhang, 2016

5._ICS_8

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 8

Dapeng Zhang, 2016

6._ICS_8

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 7

Dapeng Zhang, 2016

7._ICS_8

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._NA_95

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8411 3

Dapeng Zhang, 2016

9._NA_95

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1619 9 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._ICS_8

identical
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 1 > FP

Dapeng Zhang, 2016

11._ICS_8

identical
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8165 10

Dapeng Zhang, 2016

12._ICS_8

97.7 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block5

Dapeng Zhang, 2016

13._PA_81_[PER]

97.7 %
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A F527 T2

Dapeng Zhang, 2014

14._ICS_8 GC-08-054-1-65

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

15._ICS_8 GC-08-054-1-65

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

16._ICS_8 GC-08-054-1-65

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

17._ICS_8 GC-08-054-1-65

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

18._ICS_8 GC-08-054-1-65

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

19._NA_95 GC-01-122-6-19

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

20._NA_95 GC-08-168-4-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

21._ICS_8 GC-08-054-1-65

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

22._ICS_8 GC-08-054-1-65

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

23._ICS_8 GC-08-054-1-65

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

24._GU_144_/C

93.2 %
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8619 1 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP448	14	TcSNP469	15	TcSNP529
16	TcSNP534	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484